Prostar - Provides a GUI for DAPAR
This package provides a GUI interface for the DAPAR package. The package Prostar (Proteomics statistical analysis with R) is a Bioconductor distributed R package which provides all the necessary functions to analyze quantitative data from label-free proteomics experiments. Contrarily to most other similar R packages, it is endowed with rich and user-friendly graphical interfaces, so that no programming skill is required.
Last updated 4 months ago
proteomicsmassspectrometrynormalizationpreprocessingsoftwaregui
1 stars 2.83 score 179 dependenciesDAPAR - Tools for the Differential Analysis of Proteins Abundance with R
The package DAPAR is a Bioconductor distributed R package which provides all the necessary functions to analyze quantitative data from label-free proteomics experiments. Contrarily to most other similar R packages, it is endowed with rich and user-friendly graphical interfaces, so that no programming skill is required (see `Prostar` package).
Last updated 4 months ago
proteomicsnormalizationpreprocessingmassspectrometryqualitycontrolgodataimport
2 stars 2.46 score 140 dependencies 1 dependentsPirat - Precursor or Peptide Imputation under Random Truncation
Pirat enables the imputation of missing values (either MNARs or MCARs) in bottom-up LC-MS/MS proteomics data using a penalized maximum likelihood strategy. It does not require any parameter tuning, it models the instrument censorship from the data available. It accounts for sibling peptides correlations and it can leverage complementary transcriptomics measurements.
Last updated 13 days ago
proteomicsmassspectrometrypreprocessingsoftware
1 stars 1.80 score 68 dependencies