Package: imputeLCMD 2.1

imputeLCMD: A Collection of Methods for Left-Censored Missing Data Imputation

A collection of functions for left-censored missing data imputation. Left-censoring is a special case of missing not at random (MNAR) mechanism that generates non-responses in proteomics experiments. The package also contains functions to artificially generate peptide/protein expression data (log-transformed) as random draws from a multivariate Gaussian distribution as well as a function to generate missing data (both randomly and non-randomly). For comparison reasons, the package also contains several wrapper functions for the imputation of non-responses that are missing at random. * New functionality has been added: a hybrid method that allows the imputation of missing values in a more complex scenario where the missing data are both MAR and MNAR.

Authors:Cosmin Lazar [aut], Thomas Burger [aut], Samuel Wieczorek [cre, ctb]

imputeLCMD_2.1.tar.gz
imputeLCMD_2.1.zip(r-4.7)imputeLCMD_2.1.zip(r-4.6)imputeLCMD_2.1.zip(r-4.5)
imputeLCMD_2.1.tgz(r-4.6-any)imputeLCMD_2.1.tgz(r-4.5-any)
imputeLCMD_2.1.tar.gz(r-4.7-any)imputeLCMD_2.1.tar.gz(r-4.6-any)
imputeLCMD_2.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION
card.svg |card.png
imputeLCMD/json (API)

# Install 'imputeLCMD' in R:
install.packages('imputeLCMD', repos = c('https://samwieczorek.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

5.28 score 3 stars 6 packages 184 scripts 2.4k downloads 8 mentions 14 exports 15 dependencies

Last updated from:23debc0c09. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK187
source / vignettesOK201
linux-release-x86_64OK154
macos-release-arm64OK181
macos-oldrel-arm64OK162
windows-develOK138
windows-releaseOK89
windows-oldrelOK137
wasm-releaseOK113

Exports:generate.ExpressionDatagenerate.RollUpMapimpute.MARimpute.MAR.MNARimpute.MinDetimpute.MinProbimpute.QRILCimpute.wrapper.KNNimpute.wrapper.MLEimpute.wrapper.SVDimpute.ZEROinsertMVsmodel.Selectorpep2prot

Dependencies:BiobaseBiocGenericsgenericsgmmimputelatticeMASSMatrixmvtnormnormpcaMethodsRcppsandwichtmvtnormzoo